- Upload your data or try a test set
- Select the template-plot you want to use
- Draw trajectories or pick clusters
- Choose parameters for the constrained hierarchical clustering algorithm
- Inspect and download results
You can upload your own AnnData object as a H5AD file.
You can upload your old data here as a ZIP file.
Alternatively, you can try some of the premade examples to give scellnetor a spin! The test dataset are designed for easy and quick overview of the features of Scellnetor!
Try single cells from another hematopoiesis study
The data is based on: DPT for hematopoiesis in mouse (Moignard et al., 2015)