DIGGER About Page
Development
- DIGGER was jointly developed by the groups Data Science in Systems Biology and Computational Systems Biology
- Maintainer: Elias Albrecht
- First released by: Zakaria Louadi
Citation
If you use DIGGER 2.0, please cite:
Elias Albrecht*, Konstantin Pelz*, Alexander Gress, Hieu Nguyen Trung, Olga V Kalinina, Tim Kacprowski,
Jan Baumbach, Markus List**, Olga Tsoy**
DIGGER 2.0: digging into the functional impact
of differential splicing on human and mouse disorders, Nucleic Acids Research.
(* Joint first authors, ** Joint last authors)
DIGGER 2.0 was built on DIGGER 1.0:
Zakaria Louadi, Kevin Yuan, Alexander Gress, Olga Tsoy, Olga V Kalinina, Jan Baumbach, Tim Kacprowski*, Markus List*.
DIGGER: exploring the functional role of
alternative splicing in protein interactions, Nucleic Acids Research.
* Joint last authors.
And NEASE:
Zakaria Louadi, Maria L. Elkjaer, Melissa Klug, Chit Tong Lio, Amit Fenn, Zsolt Illes, Dario Bongiovanni,
Jan Baumbach, Tim Kacprowski, Markus List*, Olga Tsoy*.
Functional enrichment of alternative splicing
events with NEASE reveals insights into tissue identity and
diseases, Genome Biology.
(*joint last authors)
Acknowledgements
- DIGGER was created with funding from BMBF Sys_CARE project
- Source code is available on GitHub
- Data sources used in DIGGER: BioGRID-3.5, 3did-2019, DOMINE-2.0, BioMart, Pfam, Protein Data Bank
- We built DIGGER using: PPIDM Django, NetworkX, Vis.js, DNA Features Viewer, typeahead.js, DataTables.js Feather icons
Contact us
Elias Albrecht elias.albrecht@tum.de
Olga Tsoy olga.tsoy@uni-hamburg.de
Markus List markus.list@tum.de