Contact

If you encounter any issues please report them on github:
web version - Cytoscape version

For queries, please contact:

• Jan Baumbach
• Nicolas Alcaraz
• Josch Pauling
• Markus List
• Chair of Experimental Bioinformatics

Citation

• List M, Alcaraz N, Dissing-Hansen M, et al. KeyPathwayMinerWeb: online multi-omics network enrichment. Nucleic Acids Res 2016:gkw373. (download from OUP).

Other References

1. List M, Alcaraz N, Batra R (2019) De Novo Pathway-Based Classification of Breast Cancer Subtypes. In: Canzar S, Ringeling FR. (eds) Protein-Protein Interaction Networks: Methods and Protocols. Methods in Molecular Biology, vol 2074, pp 201-213. Spring Science, Humana Press, New York, NY.
2. Alcaraz N, Hartebrodt A, List M (2019) De Novo Pathway Enrichment with KeyPathwayMiner. In: Canzar S, Ringeling FR. (eds) Protein-Protein Interaction Networks: Methods and Protocols. Methods in Molecular Biology, vol 2074, pp 181-199 Spring Science, Humana Press, New York, NY.
3. Alcaraz N, List M, Dissing-Hansen M, et al. Robust de novo pathway enrichment with KeyPathwayMiner 5. F1000Res 2016;5:1531. (download from F1000)
4. Alcaraz N, Pauling J, Batra R, Barbosa E, Junge A, Christensen AGL, Azevedo V, Ditzel HJ, Baumbach J (2014) KeyPathwayMiner 4.0: Condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape. BMC Syst Biol 2014 Aug 19;8(1):99. (download from BMC).
5. Baumbach J, Friedrich T, Koetzing T, Kromer A, Mueller J, Pauling J (2012) Efficient algorithms for extracting biological key pathways with global constraints. Proceedings of the Genetic and Evolutionary Computation Conference, GECCO 2012, 2012, 169-176. (download from ACM)
6. Alcaraz N, Friedrich T, Koetzing T, Krohmer A, Mueller J, Pauling J, Baumbach J (2012) Efficient key pathway mining - Combining networks and OMICS data. Integr Biol., 2012, 4 (7), 756 - 764. PubMed (download from RSC)
7. Alcaraz NM, Kucuk H, Weile J, Wipat A, Baumbach J (2011) KeyPathwayMiner - Detecting case-specific biological pathways by using expression data. Int Math. 2011, 7:4, 299-313. (download from Tayler and Francis Online)