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Network-Level Analysis
Query interactions of multiple isoforms and generate a specific subnetwork from a list of protein variants or transcripts.
Option 1
: Enter a list of Ensembl IDs (genes, transcripts or proteins)
[Example 1: Specific interaction between two Isoforms]
[Example 2: Interaction between multiple isoforms]
[Example 3: Transcriptomics data (differentially expressed transcripts in normal/tumor samples 'BRCA cancer')]
ENST00000547238.5 ENST00000521538.5 ENST00000284425.6 ENST00000446604.6 ENST00000269080.6 ENST00000586292.5 ENST00000430352.6 ENST00000340001.8 ENST00000453985.6 ENST00000437775.6 ENST00000376166.5 ENST00000470336.5 ENST00000495591.5 ENST00000527943.5 ENST00000502855.1 ENST00000517451.5 ENST00000468137.5 ENST00000587767.1 ENST00000430908.6 ENST00000543512.1 ENST00000624421.1 ENST00000438085.1 ENST00000631329.1 ENST00000449243.1 ENST00000456363.1 ENST00000415479.1 ENST00000430034.1 ENST00000628649.1 ENST00000630111.1 ENST00000538526.5 ENST00000396233.4 ENST00000377848.7 ENST00000233710.3 ENST00000356839.9 ENST00000578711.1 ENST00000577191.5 ENST00000322910.9 ENST00000577433.5 ENST00000582056.5 ENST00000582379.1 ENST00000579425.5 ENST00000578579.2 ENST00000578809.5 ENST00000578033.1 ENST00000578824.5 ENST00000583760.1 ENST00000467278.5 ENST00000368122.2 ENST00000368121.3 ENST00000613168.1 ENST00000503407.5 ENST00000360596.6 ENST00000482085.1 ENST00000488967.5 ENST00000480297.5 ENST00000437930.4 ENST00000596007.1 ENST00000625277.1 ENST00000462494.5 ENST00000464611.1 ENST00000570382.1 ENST00000615544.4 ENST00000345517.7 ENST00000442912.5 ENST00000438964.6 ENST00000553882.1 ENST00000424234.6 ENST00000388922.8 ENST00000271836.10 ENST00000356955.6 ENST00000356518.6 ENST00000466620.5 ENST00000617732.1 ENST00000619289.4 ENST00000284984.7 ENST00000464589.1 ENST00000492656.1 ENST00000284987.5 ENST00000489159.1 ENST00000271643.8 ENST00000310677.8 ENST00000557099.2 ENST00000554781.5 ENST00000554577.5 ENST00000555684.2 ENST00000472568.5 ENST00000283296.11 ENST00000568908.5 ENST00000305046.12 ENST00000515694.4 ENST00000506651.5 ENST00000504498.1 ENST00000632775.1 ENST00000625860.2 ENST00000515683.5 ENST00000502590.5 ENST00000320741.6 ENST00000372013.7 ENST00000278175.9 ENST00000528655.5 ENST00000534464.1 ENST00000530439.1 ENST00000524948.5 ENST00000525063.2 ENST00000305988.5 ENST00000433214.2 ENST00000419304.6 ENST00000489523.5 ENST00000401412.5 ENST00000310398.6 ENST00000414935.1 ENST00000418473.6 ENST00000471542.5 ENST00000467905.5 ENST00000548033.5 ENST00000354567.6 ENST00000354675.10 ENST00000402676.6 ENST00000465351.5 ENST00000477661.1 ENST00000442997.5 ENST00000434459.6 ENST00000421196.7 ENST00000604507.5 ENST00000407674.5 ENST00000380554.4 ENST00000439082.6 ENST00000361640.4 ENST00000544168.5 ENST00000371221.3 ENST00000297785.7 ENST00000452905.6 ENST00000564595.6 ENST00000395240.7 ENST00000565355.1 ENST00000361355.8 ENST00000541887.5 ENST00000234816.6 ENST00000367629.1 ENST00000301455.6 ENST00000393962.6 ENST00000265748.6 ENST00000300060.6 ENST00000559887.1 ENST00000491192.1 ENST00000489109.1 ENST00000495713.5 ENST00000505805.1 ENST00000460439.5 ENST00000509648.5 ENST00000368947.8 ENST00000308423.6 ENST00000591562.1 ENST00000613571.1 ENST00000617500.4 ENST00000374700.6 ENST00000431216.5 ENST00000624319.1 ENST00000624094.1 ENST00000629587.1 ENST00000250244.10 ENST00000355285.9 ENST00000333467.3 ENST00000592535.5 ENST00000252490.5 ENST00000343267.7 ENST00000458447.5 ENST00000421243.5 ENST00000356591.4 ENST00000554625.5 ENST00000439274.6 ENST00000311813.8 ENST00000379507.7 ENST00000377425.8 ENST00000297988.5 ENST00000537089.5 ENST00000623743.1 ENST00000412626.2 ENST00000542022.1 ENST00000541959.5 ENST00000614079.1 ENST00000373345.8 ENST00000578351.1 ENST00000421050.2 ENST00000491688.1 ENST00000551828.5 ENST00000551731.1 ENST00000621439.4 ENST00000263382.7 ENST00000541428.3 ENST00000375544.7 ENST00000341491.8 ENST00000337304.2 ENST00000529087.1 ENST00000541029.1 ENST00000306279.3 ENST00000489682.1 ENST00000361216.7 ENST00000447527.1 ENST00000547250.5 ENST00000614837.1 ENST00000591249.5 ENST00000483994.1 ENST00000472174.6 ENST00000568562.1 ENST00000585124.5 ENST00000557901.5 ENST00000616743.1 ENST00000395961.7 ENST00000358791.9 ENST00000419510.6 ENST00000232014.8 ENST00000496823.1 ENST00000534762.5 ENST00000492366.5 ENST00000331595.8 ENST00000480756.1 ENST00000255192.7 ENST00000393040.7 ENST00000350051.7 ENST00000520626.5 ENST00000306349.12 ENST00000283147.6 ENST00000620910.2 ENST00000495514.5 ENST00000273395.8 ENST00000327705.13 ENST00000491209.5 ENST00000513424.1 ENST00000511589.1 ENST00000506782.1 ENST00000512570.1 ENST00000302759.10 ENST00000287598.10 ENST00000298295.3 ENST00000448778.1 ENST00000617612.1 ENST00000410013.1 ENST00000396650.6 ENST00000301246.9 ENST00000588213.1 ENST00000579760.5 ENST00000311661.4 ENST00000392445.6 ENST00000582295.1 ENST00000337843.6 ENST00000488701.1 ENST00000495053.1 ENST00000473545.1 ENST00000470326.1 ENST00000461983.5 ENST00000497061.1 ENST00000238044.7 ENST00000331342.4 ENST00000599899.5 ENST00000428956.6 ENST00000435363.6 ENST00000504110.1 ENST00000313164.9 ENST00000513922.1 ENST00000429260.6 ENST00000178638.7 ENST00000344366.7 ENST00000300900.8 ENST00000590203.1 ENST00000290039.5 ENST00000262138.3 ENST00000368125.8 ENST00000302628.8 ENST00000548263.5 ENST00000549935.6 ENST00000505071.5 ENST00000361675.6 ENST00000432899.5 ENST00000594523.5 ENST00000503303.1 ENST00000409921.5 ENST00000449030.5 ENST00000483659.5 ENST00000295055.12 ENST00000474026.5 ENST00000487223.5 ENST00000480581.1 ENST00000586851.5 ENST00000395813.5 ENST00000341049.6 ENST00000393467.1 ENST00000405348.5 ENST00000222693.4 ENST00000495841.1 ENST00000343213.2 ENST00000523349.5 ENST00000581852.5 ENST00000378825.4 ENST00000403162.7 ENST00000397558.6 ENST00000355417.6 ENST00000618404.4 ENST00000622526.1 ENST00000620991.1 ENST00000259607.6 ENST00000489442.5 ENST00000361115.4 ENST00000620250.1 ENST00000256442.9 ENST00000506572.5 ENST00000507798.1 ENST00000288207.6 ENST00000523985.5 ENST00000515468.1 ENST00000474539.5 ENST00000481223.6 ENST00000418865.6 ENST00000368258.7 ENST00000606017.1 ENST00000317310.4 ENST00000586233.5 ENST00000438020.5 ENST00000309881.11 ENST00000464213.1 ENST00000447544.6 ENST00000394788.7 ENST00000488048.1 ENST00000441109.6 ENST00000432207.5 ENST00000538969.5 ENST00000415148.6 ENST00000617871.4 ENST00000310955.10 ENST00000591248.5 ENST00000492796.5 ENST00000540998.5 ENST00000263201.5 ENST00000229265.10 ENST00000275517.7 ENST00000621016.4 ENST00000395284.7 ENST00000625631.1 ENST00000468397.1 ENST00000380725.1 ENST00000440480.6 ENST00000335183.10 ENST00000395577.2 ENST00000250535.4 ENST00000199764.6 ENST00000408965.3 ENST00000366955.7 ENST00000469862.1 ENST00000614578.1 ENST00000215980.9 ENST00000565157.5 ENST00000281453.9 ENST00000510146.5 ENST00000368326.5 ENST00000371485.7 ENST00000368949.8 ENST00000360526.7 ENST00000565568.1 ENST00000425368.6 ENST00000483004.1 ENST00000327726.10 ENST00000592860.2 ENST00000630130.2 ENST00000457277.5 ENST00000492582.5 ENST00000620033.4 ENST00000409810.6 ENST00000372045.5 ENST00000372042.5 ENST00000521296.5 ENST00000320477.9 ENST00000336832.6 ENST00000423850.5 ENST00000383817.5 ENST00000618572.4 ENST00000589710.5 ENST00000314355.6 ENST00000585432.1 ENST00000064724.7 ENST00000413119.2 ENST00000618236.1 ENST00000399899.1 ENST00000296130.4 ENST00000472679.1 ENST00000493185.2 ENST00000520796.5 ENST00000252456.6 ENST00000551286.1 ENST00000378980.7 ENST00000610543.4 ENST00000418500.1 ENST00000243222.8 ENST00000370096.7 ENST00000470170.1 ENST00000615798.4 ENST00000353479.9 ENST00000433822.1 ENST00000225964.9 ENST00000474644.1 ENST00000297268.10 ENST00000304636.7 ENST00000317840.9 ENST00000371817.7 ENST00000485591.1 ENST00000473258.1 ENST00000491769.1 ENST00000353578.8 ENST00000377612.8 ENST00000222271.6 ENST00000425807.1 ENST00000549116.5 ENST00000550027.5 ENST00000564057.1 ENST00000498262.1 ENST00000366528.3 ENST00000562929.1 ENST00000297564.6 ENST00000522940.5 ENST00000520271.5 ENST00000524245.5 ENST00000292907.7 ENST00000481297.1 ENST00000437291.6 ENST00000515763.1 ENST00000368222.7 ENST00000368603.5 ENST00000368600.7 ENST00000392531.3 ENST00000526180.5 ENST00000227251.7 ENST00000533971.1 ENST00000525823.1 ENST00000528961.5 ENST00000533280.5 ENST00000527950.5 ENST00000616970.4 ENST00000534699.5 ENST00000494610.1 ENST00000532313.5 ENST00000304749.6 ENST00000520566.1 ENST00000483735.1 ENST00000488627.5 ENST00000330295.9 ENST00000520337.1 ENST00000531014.5 ENST00000530094.5 ENST00000433655.5 ENST00000393747.3 ENST00000318978.5 ENST00000472083.1 ENST00000006053.6 ENST00000306602.2 ENST00000306621.7 ENST00000343575.10 ENST00000286758.4 ENST00000575168.1 ENST00000508487.2 ENST00000264888.5 ENST00000398000.6 ENST00000566229.1 ENST00000293230.9 ENST00000599198.5 ENST00000480413.1 ENST00000274867.8 ENST00000479151.5 ENST00000551919.5 ENST00000002501.10 ENST00000357275.6 ENST00000547937.5 ENST00000552145.5 ENST00000393155.5 ENST00000549712.1 ENST00000446312.5 ENST00000324340.13 ENST00000625286.1 ENST00000585317.1 ENST00000630471.2 ENST00000467318.5 ENST00000297439.3 ENST00000305631.6 ENST00000553834.1 ENST00000557117.1 ENST00000373960.3 ENST00000228027.11 ENST00000535035.5 ENST00000482265.1 ENST00000569935.1 ENST00000474446.5 ENST00000554735.1 ENST00000557661.1 ENST00000554441.5 ENST00000620994.1 ENST00000461646.1 ENST00000247191.6 ENST00000378723.7 ENST00000394549.6 ENST00000460830.1 ENST00000463619.1 ENST00000483783.1 ENST00000478597.5 ENST00000367817.3 ENST00000482156.5 ENST00000370765.10 ENST00000523967.5 ENST00000366991.4 ENST00000239223.3 ENST00000558978.5 ENST00000558472.5 ENST00000584983.5 ENST00000409317.5 ENST00000343380.5 ENST00000313708.10 ENST00000622875.4 ENST00000368648.7 ENST00000460612.5 ENST00000493896.2 ENST00000487040.1 ENST00000542552.1 ENST00000334286.7 ENST00000298049.11 ENST00000217182.4 ENST00000406555.7 ENST00000490469.5 ENST00000397210.7 ENST00000275493.6 ENST00000421510.5 ENST00000462917.1 ENST00000482111.1 ENST00000568426.1 ENST00000584901.5 ENST00000577269.5 ENST00000578324.5 ENST00000584798.1 ENST00000382330.7 ENST00000531180.1 ENST00000560200.5 ENST00000441206.1 ENST00000446188.1 ENST00000257832.6 ENST00000496957.1 ENST00000477397.1 ENST00000394773.6 ENST00000483199.5 ENST00000460939.5 ENST00000541935.5 ENST00000391874.2 ENST00000427067.6 ENST00000259486.10 ENST00000522167.5 ENST00000339643.9 ENST00000004982.4 ENST00000005178.5 ENST00000005286.8 ENST00000010404.6 ENST00000013222.5 ENST00000014914.5 ENST00000037502.10 ENST00000062104.3 ENST00000166345.7 ENST00000167586.6 ENST00000171887.8 ENST00000172229.7 ENST00000190983.4 ENST00000202028.9 ENST00000209929.9 ENST00000212355.8 ENST00000215582.7 ENST00000215743.7 ENST00000217026.4 ENST00000217939.6 ENST00000220772.7 ENST00000221784.8 ENST00000222726.3 ENST00000223215.8 ENST00000225688.3 ENST00000225777.7 ENST00000226067.9 ENST00000229729.10 ENST00000231721.6 ENST00000237623.11 ENST00000238633.6 ENST00000240123.11 ENST00000242159.4 ENST00000242208.4 ENST00000242576.6 ENST00000243050.5 ENST00000243056.4 ENST00000243562.13 ENST00000244289.8 ENST00000244766.6 ENST00000244926.3 ENST00000246070.2 ENST00000248564.5 ENST00000250160.10 ENST00000250448.2 ENST00000251595.10 ENST00000252242.8 ENST00000252483.9 ENST00000253188.8 ENST00000253462.7 ENST00000254079.8 ENST00000254351.8 ENST00000254508.6 ENST00000256062.9 ENST00000256104.4 ENST00000256178.7 ENST00000256593.7 ENST00000256733.8 ENST00000257549.8 ENST00000257895.9 ENST00000257905.12 ENST00000258403.7 ENST00000259254.8 ENST00000259365.8 ENST00000259989.6 ENST00000260113.6 ENST00000260302.7 ENST00000260731.4 ENST00000261366.9 ENST00000261405.9 ENST00000261597.8 ENST00000262041.5 ENST00000262300.12 ENST00000262460.4 ENST00000262487.4 ENST00000262795.5 ENST00000262890.7 ENST00000263174.8 ENST00000263409.8 ENST00000263734.4 ENST00000263735.8 ENST00000264005.9 ENST00000264126.7 ENST00000264664.4 ENST00000264775.9 ENST00000264790.6 ENST00000265294.8 ENST00000265340.11 ENST00000265896.9 ENST00000265960.7 ENST00000267101.7 ENST00000267620.14 ENST00000267853.9 ENST00000269187.9 ENST00000271064.11 ENST00000271452.7 ENST00000272223.2 ENST00000274629.8 ENST00000275418.11 ENST00000276914.6 ENST00000278407.8 ENST00000281030.2 ENST00000282074.6 ENST00000282096.8 ENST00000282470.10 ENST00000286574.8 ENST00000287814.4 ENST00000287820.10 ENST00000288135.5 ENST00000289316.2 ENST00000290705.12 ENST00000291525.11 ENST00000291527.2 ENST00000291700.8 ENST00000292357.7 ENST00000292641.3 ENST00000293308.10 ENST00000293662.8 ENST00000293872.12 ENST00000294435.7 ENST00000295754.9 ENST00000295927.3 ENST00000295992.7 ENST00000296233.3 ENST00000296289.10 ENST00000296370.3 ENST00000297267.13 ENST00000297316.4 ENST00000297468.3 ENST00000297488.10 ENST00000297904.3 ENST00000298687.9 ENST00000299610.4 ENST00000299759.10 ENST00000300055.9 ENST00000300093.8 ENST00000300403.10 ENST00000300851.10 ENST00000301149.7 ENST00000301242.8 ENST00000301286.4 ENST00000301464.3 ENST00000301634.11 ENST00000301905.8 ENST00000301959.9 ENST00000302006.3 ENST00000303460.4 ENST00000303645.9 ENST00000304141.4 ENST00000304298.3 ENST00000304523.9 ENST00000304567.9 ENST00000305249.9 ENST00000305352.6 ENST00000306324.3 ENST00000306402.10 ENST00000306560.1 ENST00000307046.8 ENST00000307068.4 ENST00000307719.8 ENST00000308796.10 ENST00000308868.4 ENST00000309099.6 ENST00000309539.7 ENST00000309576.10 ENST00000310123.7 ENST00000310775.11 ENST00000311208.12 ENST00000311322.8 ENST00000312499.5 ENST00000313244.13 ENST00000313288.8 ENST00000313375.7 ENST00000315274.6 ENST00000315491.11 ENST00000316341.7 ENST00000316793.7 ENST00000317276.8 ENST00000317370.12 ENST00000317449.4 ENST00000317508.10 ENST00000318579.8 ENST00000319441.5 ENST00000319694.2 ENST00000320307.8 ENST00000320868.9 ENST00000321765.9 ENST00000322563.7 ENST00000322914.7 ENST00000323274.14 ENST00000323871.9 ENST00000324489.5 ENST00000325307.11 ENST00000325823.11 ENST00000326080.9 ENST00000326172.9 ENST00000326324.10 ENST00000326771.2 ENST00000327979.6 ENST00000328159.8 ENST00000328642.11 ENST00000329168.3 ENST00000329875.12 ENST00000330459.7 ENST00000330915.7 ENST00000331029.11 ENST00000331393.8 ENST00000331662.3 ENST00000333047.9 ENST00000333461.5 ENST00000333813.3 ENST00000334047.11 ENST00000334895.9 ENST00000335295.4 ENST00000335953.8 ENST00000336292.10 ENST00000336334.7 ENST00000336916.8 ENST00000337514.10 ENST00000338448.9 ENST00000338483.6 ENST00000338530.8 ENST00000338702.3 ENST00000339145.8 ENST00000339430.9 ENST00000339732.9 ENST00000339944.4 ENST00000340246.9 ENST00000341485.9 ENST00000341846.9 ENST00000341901.4 ENST00000343110.2 ENST00000343195.8 ENST00000343597.3 ENST00000344616.3 ENST00000346199.2 ENST00000346208.3 ENST00000347027.10 ENST00000347471.8 ENST00000347617.10 ENST00000347624.3 ENST00000348225.6 ENST00000348367.8 ENST00000348795.8 ENST00000348850.9 ENST00000351004.7 ENST00000351325.8 ENST00000351839.7 ENST00000352331.8 ENST00000352433.9 ENST00000352551.9 ENST00000354026.10 ENST00000354275.2 ENST00000354323.2 ENST00000354332.8 ENST00000354571.5 ENST00000354914.7 ENST00000354952.6 ENST00000355119.8 ENST00000355962.4 ENST00000356053.7 ENST00000356455.8 ENST00000356495.4 ENST00000356524.8 ENST00000356648.5 ENST00000356698.8 ENST00000356950.1 ENST00000357122.8 ENST00000357246.3 ENST00000357703.6 ENST00000357802.6 ENST00000358397.9 ENST00000358455.4 ENST00000358715.3 ENST00000359013.4 ENST00000359462.9 ENST00000359560.7 ENST00000359787.5 ENST00000359843.7 ENST00000359847.3 ENST00000359944.10 ENST00000360319.8 ENST00000360463.7 ENST00000360537.6 ENST00000360997.6 ENST00000361042.8 ENST00000361084.9 ENST00000361148.6 ENST00000361157.10 ENST00000361170.6 ENST00000362020.4 ENST00000363925.1 ENST00000366654.4 ENST00000366999.8 ENST00000367029.4 ENST00000367075.3 ENST00000367208.1 ENST00000367274.8 ENST00000367288.4 ENST00000367814.8 ENST00000368404.8 ENST00000368450.5 ENST00000368557.5 ENST00000368589.5 ENST00000368653.7 ENST00000368677.2 ENST00000368680.3 ENST00000368701.5 ENST00000368786.5 ENST00000369073.3 ENST00000369163.3 ENST00000369636.6 ENST00000369798.6 ENST00000370015.8 ENST00000370207.4 ENST00000370674.3 ENST00000370690.7 ENST00000370818.7 ENST00000370861.1 ENST00000371249.6 ENST00000371250.3 ENST00000371347.9 ENST00000371464.7 ENST00000371600.7 ENST00000371625.7 ENST00000372003.5 ENST00000372017.3 ENST00000372027.9 ENST00000372224.8 ENST00000372263.3 ENST00000372273.7 ENST00000372330.3 ENST00000372686.5 ENST00000372731.8 ENST00000372780.5 ENST00000372868.6 ENST00000373031.4 ENST00000373144.7 ENST00000373188.6 ENST00000373298.6 ENST00000373736.6 ENST00000373806.1 ENST00000373818.8 ENST00000373944.7 ENST00000374037.7 ENST00000374268.3 ENST00000374291.5 ENST00000374403.3 ENST00000374469.5 ENST00000374643.7 ENST00000374672.4 ENST00000375244.7 ENST00000375469.5 ENST00000375559.7 ENST00000375561.9 ENST00000375562.8 ENST00000375864.4 ENST00000376450.7 ENST00000376521.5 ENST00000377050.4 ENST00000377104.3 ENST00000377126.3 ENST00000377182.4 ENST00000377216.3 ENST00000377493.9 ENST00000377670.8 ENST00000377727.1 ENST00000377791.3 ENST00000378300.9 ENST00000378482.6 ENST00000378533.3 ENST00000378700.7 ENST00000379097.7 ENST00000379242.7 ENST00000379328.7 ENST00000379389.4 ENST00000379527.6 ENST00000379589.3 ENST00000379742.4 ENST00000379743.8 ENST00000379749.8 ENST00000379818.3 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This option supports the visualization of up to 2000 genes/transcripts.
Make sure all the inputs correspond to Ensembl IDs and do not mix genes with transcript IDs.
Option 2
: Upload a file with transcript counts
Upload a transcript count file
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Specify the maximum number of transcripts
This option supports the output of tools such as Cufflinks and Kallisto (examples:
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The "maximum number of transcripts" refers to the number of transcripts DIGGER will select when building the sub-network, based on the highest scoring transcripts.
The uploaded file can be either a comma or tab separated table containing Ensembl transcript IDs and counts. The first column of your file must correspond to Ensembl transcript IDs (can have any column name) and there must be a column named either 'tpm', 'counts' or 'FPKM'.
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